Skip common site navigation and headers
United States Environmental Protection Agency
Monitoring and Assessing Water Quality
Begin Hierarchical Links EPA Home > Water > Wetlands, Oceans, & Watersheds > Monitoring and Assessing Water Quality > Biological Assessment > Lake and Resevoir Bioassessment and Biocriteria Technical Guidance Document > Chapter 3: Overview of Bioassessment and Birocriteria End Hierarchical Links

 

Chapter 3
Overview of Bioassessment and Birocriteria


3.1 Conceptual Framework

The impact of human activities on lakes has been recognized for many centuries, and in the past 50 years, there has been more focus on the biological measurement of this impact. By 1950, the first index of aquatic species’ tolerance to organic pollution, the “Saprobic System,” was in use (see Hynes 1994 for review). More recently, indices such as the Hilsenhoff Biotic Index (HBI), which takes into account both organic pollution tolerance and the relative abundance of species (e.g., Hilsenhoff 1987), have been developed.

As modern ecologists recognized that human influences were reducing local and global biological diversity, the measurement of community structure (including species diversity and ecological roles) assumed increasing importance in evaluation of polluted sites. Indices to measure species diversity and distribution in a community (Pielou 1977) were developed, but achieved only limited use because their one-dimensional focus leads to high levels of uncertainty in assessment.

3.1.1 Multimetric Biological Assessment

The multiple attribute (or multimetric) approach, incorporating pollution tolerance, diversity, and ecological functions, was developed to more fully characterize the human impact on aquatic organisms. Karr (1981) and Karr et al. (1986) developed the fish Index of Biotic Integrity (IBI) and demonstrated that combinations of these attributes, or measurements, forming an index, provide valuable assessments of water resources.

The multimetric approach defines an array of measurements, each of which represents a measurable characteristic of the biological assemblage that changes in a predictable way with increased or decreased environmental stressors (USEPA 1996a, USEPA 1997d). When integrated, a multimetric index functions as an overall indicator of biological condition. Each assemblage in the aquatic community (for example, fish or algae) might have differing responses to pollution or degraded conditions. Thus, assessment methods that target multiple species and assemblages are capable of detecting a broad range of stresses and reflect the condition of a large segment of the ecosystem. However, there is not yet a complete understanding of how measurements respond, either quantitatively or qualitatively, to perturbation in general and to particular stresses.

To provide for an effective assessment, the variables selected to determine biological integrity should:

Be relevant to societal concerns - Biological measurements must be related to the properties of biotic systems that are of concern to society, such as native species, fish production, and biological diversity.

Be responsive to environmental stresses - Biological measurements and the measurements developed from them must be sensitive to environmental stress, and the response must be interpretable.

Have low uncertainty - Variability should be understood and measurement error should be controllable.

Be cost-effective - The cost incurred in measurement should be proportional to the value of the information obtained.

Be environmentally benign to measure - Sampling methods that disturb or alter habitats and organisms should be avoided.

Assessment of biological integrity typically focuses on a few broad but integral classes of ecological properties (e.g., Barbour et al. 1992, Karr 1991) that respond to anthropogenic impacts (e.g., Schindler 1988, Schindler et al. 1989), including:

Health - Individuals or populations.

Species structure and composition - The number and kinds of species in an assemblage. Species structure includes both diversity and the presence of pollution-tolerant species.

Trophic structure - The relative proportion of different feeding levels, such as filter feeders, scavengers, or predators.

System function - The productivity and material cycling of the system.

Multimetric assessment typically includes several measurements of at least three properties (species structure, trophic structure, and system function). Individual and population health measurements are used less often because they are not yet well developed for invertebrates and plants.

Biological assessment of waterbodies depends on our ability to define, measure, and compare biological condition among similar systems. Impairment of the waterbody is judged by its departure from the expected condition. This ability requires a functional definition of biological integrity as the condition of the aquatic community inhabiting unimpaired waterbodies of a specified habitat as measured by community structure and function (USEPA 1990a).

This definition of biological integrity makes the explicit assumption that natural, undisturbed systems are healthier than those changed by human activities. Because biological integrity is defined relative to unimpaired conditions, it must also be measured relative to those conditions. The four classes of ecological properties listed above are measurable relative to natural or unimpaired conditions.

Few waterbodies, however, are unimpacted. Minimally impaired waterbodies typically form the basis for defining reference conditions for biological assessment. Artificial lakes, such as reservoirs and impoundments, have no natural or “least disturbed” condition. Nevertheless, it is possible to define “most desirable” and “least desirable” conditions for artificial lakes.

3.1.2 Biological Assessment Process

The information of the biological variables is transformed to numeric scores, or rankings from good to poor. Such scores reduce the complexity and uncertainty of multidimensional data for purposes of assessment, remediation, and communication of results to the public and decision makers. For example, managers might need to know whether a lake is in good condition, whether it needs to be watched more closely, or whether more intensive studies should be made to determine a course of action for restoration or remediation. Data analysis streamlines the information from the data to two or three dimensions that can be used in decision-making.

Multimetric biological indices are similar in concept to the common economic indices such as the Index of Leading Economic Indicators (Lahiri and Moore 1991). Both economic and biological indices are based on comparison to an operationally defined and measurable reference standard. In the economic indices, individual attributes are first standardized as a percentage of a baseline value, usually an annual average from a decade before (Green and Beckman 1992). The attribute scores are summed, and the sum is likewise expressed as a percentage of the index baseline. Standardization weights indicators equally and allows the use of indicators with different units (hours worked, persons unemployed, billions of dollars, etc.). In multimetric biological indices the metrics are standardized as a score compared to a reference standard. The basic procedural steps for biological assessment are as follows:

  1. Sample the biological groups (assemblages) selected by the program, recording the relative abundance and other characteristics of each species.
  2. Calculate chosen metrics using relative abundance and other measurements: for example, number of species, number of intolerant species, percent abundance of filter feeders.
  3. Compare each to its expected value under reference conditions and assign a numeric score corresponding to good (similar to reference), fair (different from reference), or poor (substantially different from reference).
  4. Sum the scores of all metrics of an assemblage to derive a total score for the assemblage.
  5. Compare the total score to the biological criterion based in part on the expected total score under reference conditions.

In biological assessment, reference conditions are established by identifying least impaired reference sites, characterizing the biological condition of the reference sites, and setting thresholds for scoring the measurements. For reservoirs or in other instances where “best-quality” lakes are too few or not definable, an alternative is to select the highest quality conditions from among all lakes (TVA 1994).

Multimetric bioassessment is most effective when it is modified to specific regional conditions. Bioassessment of streams has been successful when modified and calibrated regionally (e.g., Barbour et al. 1996a, Miller et al. 1988, Ohio EPA 1990). Success requires region-specific selection and calibration of measurements, as well as regional characterization of reference conditions. For example, submerged macrophytes are rare in rocky, high-elevation or high-latitude lakes and may be an inappropriate assemblage in such a region.

3.1.3 Biological Assessment in Ecological Risk Assessment

Ecological risk assessment “evaluates the likelihood that adverse ecological effects may occur or are occurring as a result of exposure to one or more stressors” (USEPA 1992c). Risk assessment is a process for organizing and analyzing data, information, assumptions, and uncertainties in order to examine the likelihood of adverse effects (USEPA 1996d). This process provides risk managers with a framework for explicitly considering available scientific information in conjunction with social, political, and economic factors when planning a course of action with environmental consequences.

Problem formulation is the foundation of risk assessment and depends on identification of assessment endpoints, development of conceptual models, and creation of an analysis plan.

Assessment endpoints are “explicit expressions of the actual environmental value that is to be protected” (USEPA 1992c). Assessment endpoints include both a valued ecological entity and an attribute of that entity that is potentially at risk (USEPA 1996d). For example, the fish community of a lake is an entity, and its overall similarity to native fish communities in undisturbed lakes could be the attribute for ecological risk assessment.

Biological assemblages and their attributes, as discussed in this and other biocriteria documents (e.g., USEPA 1996a), are clearly potential assessment endpoints for ecological risk assessments. Following risk assessment, a decision may be made to proceed with a management action. Monitoring can help determine if the desired result of the management action is achieved. Again, monitoring must include assessment endpoints, and established biocriteria can provide unambiguous ecological assessment endpoints.

3.2 Application To Lakes

Biological assessment emphasizes evaluation of both habitat and biota. As integrators of processes in their watersheds, lakes receive and retain matter and energy released throughout the watershed. Human activities are part of these processes and can affect a lake’s habitat and biological community. The impact of human activities directly affects lake habitat and can alter the lake’s physical-chemical environment (Figure 3-1). For example, contaminant discharges can affect the chemistry of both the water and the sediment. Agricultural and urban land uses in the watershed contribute sediment that affects the physical habitat. Humans can affect biological communities either directly by such activities as stocking and harvesting, or indirectly through impacts to the physical and chemical habitat of the biota.

Figure 3-1. The information provided in this graphic is too detailed to be described in this tag. Please contact EPA at OW-GENERAL@epa.gov to ask for this information in another manner.

Previous multimetric indices of lake quality have focused on lake condition compared to water quality standards, rather than on the actual biological condition of a lake compared to its regional potential. A multimetric index for environmental quality of the Great Lakes used physical, chemical, biological, and toxicity variables (Steinhart et al. 1982). The Ohio EPA developed a multimetric assessment for inland lakes and reservoirs, the Ohio Lake Condition Index (LCI) (Davic and DeShon 1989), which was used to report lake condition for more than 300 public lakes in Ohio. The Ohio LCI consists of 14 metrics which represent biological, chemical, physical, and public perception of lake condition. Biological components in the Ohio LCI include fish IBI, macrophytes, phytoplankton chlorophyll, fecal coliform bacteria, and fish tissue contamination. Data are compared against water quality standards or general criteria to determine good, fair, or poor condition.

The Tennessee Valley Authority (TVA) developed biological assessment for its reservoirs that used a similar approach to the multimetric indices developed for stream assessment (Dycus and Meinert 1992, TVA 1994). TVA’s assessment uses five indices based on benthic macroinvertebrates, fish, chlorophyll a, sediment quality, and dissolved oxygen. The macroinvertebrate and fish indices are multimetric.

The USEPA lake biological assessment procedure developed in this document may include up to seven biological assemblages: planktonic algae, attached algae, sedimented diatoms, aquatic plants, bottom-dwelling invertebrates, fish, and planktonic animals (Figure 3-2). Habitat scoring components include the watershed, nearshore zone, water chemistry, and sediment.

Figure 3-1. The information provided in this graphic is too detailed to be described in this tag. Please contact EPA at OW-GENERAL@epa.gov to ask for this information in another manner.

Figure 3-2. Biological assemblages used for lake assessments.

The proposed assessment of lake condition is accomplished with additive indices that integrate the habitat and biological scores. The process produces up to three habitat scores, and three or more biological index scores. The scores reduce the complexity of a lake to an understandable level for guiding appropriate remediation or other management actions.

3.2.1 Tiers for Sampling

Biological assessment of lakes is implemented in tiers corresponding to the level of effort required. Each suggested tier includes both biological and habitat components. The tiered approach for lake bioassessment developed here allows customization of the methodology to the user’s needs, questions, and resources available. Tier 1 focuses on sampling trophic state indicators, and Tier 2 focuses on sampling biological assemblages for composition and structure indicators (Figure 3-3 Table 3-1). Each tier is further divided into single- and multiple-visit sampling, A and B, respectively. Tier 1A and 1B are the same except that Tier 1B requires several samples during the growing season to obtain seasonal averages of chlorophyll a and nutrient concentrations.

Table 3-1. The information provided in this graphic is too detailed to be described in this tag. Please contact EPA at OW-GENERAL@epa.gov to ask for this information in another manner.

Tier 2A consists of biological assemblages that integrate lake conditions and are sampled during an index period. Tier 2B consists of assemblages with individuals that are short-lived, and hence do not integrate over time. Tier 2B assemblages are sampled repeatedly during the growing season to obtain seasonal averages.

Because chlorophyll and nutrient concentrations are highly variable, Tier 1A, which is sampled only during an index period, may fail to characterize an individual lake. Tier 1A is appropriate for characterizing a region or a class of lakes, especially if many lakes are to be sampled. For characterizing the trophic state of individual lakes with confidence, Tier 1B is preferred.

Both Tier 2A and 2B sample biological assemblages to estimate indicators of species structure, trophic structure, and function. Tier 2B requires multiple visits and analysis, but does not necessarily obtain better or more precise information than Tier 2A.

3.2.2 Classification of Lakes

Because there is tremendous variation in the physical, chemical, and biological characteristics of lakes nationwide, the first step in defining reference conditions is to classify lakes so that comparisons can be made within, not across, classes. Classification of natural lakes should reflect the inherent properties of lakes independent of human influence and therefore must be made on the basis of measurements that do not change as a result of human activities.

A second requirement of classification is that it should reflect differences in the biota of the classes. A deep lake might have a fish assemblage different from that of a shallow lake, and classification should distinguish between the two types of systems. Several lake classifications have been proposed (e.g., Hutchinson 1957, Leach and Herron 1992); however, only a handful of lake classes would be present in a single region. Relevant lake classes must be determined by existing information and the professional judgment of scientists familiar with lakes of the region.

3.2.3 Characterization of Reference Conditions

Five elements, detailed in Section 4.2, may be used to establish reference conditions for lake biological assessment:

  • Biological survey of sites.
  • Paleolimnology.
  • Evaluation of historical data.
  • Prediction of expected conditions using models.
  • Expert consensus.

Expert consensus is required for developing reference conditions. Reference conditions developed from empirical data are preferred: such as biosurveys, sites, paleolimnology, or historical data.

A biological survey provides the best current information about the biota for the system of concern as a real world reflection of biological integrity. This information is essential to determining the reference condition and subsequent biological criteria. There are two approaches for characterizing reference conditions from a biological survey:

Site based - Selection of minimally impaired or most natural sites in a region; or

Condition based - Setting reference conditions as the best available ambient biological conditions.

Paleolimnology is the microscopic examination of sediment cores to provide an accurate record of the relative abundance of certain organisms (primarily diatoms) over the history of natural lakes. The advantage of paleolimnology is that any lake with an accurate sedimentary record can be a reference site regardless of the severity of present-day pollution. Thus, a truly representative sample of lake reference sites can be drawn. With some exceptions, paleolimnology is generally not applicable to impoundments.

A panel of diverse regional experts involved in the determination of the reference condition and the derivation of the biocriteria is the best approach to thoroughly and objectively assimilate the above information. With a carefully selected and balanced panel, all of the nuances of the local ecology as well as the best interests of the jurisdiction can be equated to the designated uses of the waterbody in designing the most protective criteria possible. This approach also reduces the risk of making insufficiently informed decisions inherent in data interpretation by just one or a few like-minded people.

3.2.4 Reference Condition In Reservoirs

reserviour graphicThroughout this document where differences between lakes and reservoirs dictate alternative methods, strategies, etc., an icon appears, directing the reader to reservoir-specific information.

The methodology described in this document is intended for both reservoirs and natural lakes. Because reservoirs are entirely artificial environments, “natural reference condition” has no meaning. Reservoirs, created by the damming of a stream, have characteristics of both rivers and lakes (Thornton 1990a). Reservoirs are divided into three zones (riverine, transitional, and lacustrine), which correspond to flowing, river-like conditions; transition to lake conditions; and nonflowing, lake-like conditions near the dam, respectively. With expected life spans ranging from one to several decades, reservoirs are more ephemeral than most natural lakes and have several physical characteristics not shared with natural lakes. The lakes most like reservoirs are those formed by natural dams in stream valleys (e.g., beaver dams, terminal moraines, landslides).

Reservoirs vary widely in physical characteristics of shape, size, and hydrology. They can range from small shallow impoundments, to deep storage reservoirs, to “run of the river” flow-through reservoirs on large rivers. They are built and managed for widely different purposes, including flood control, navigation, water storage, hydroelectric generation, gamefish production, and others. The management practices in turn affect both physical characteristics (water level variability, stratification) and biota (stocking of fish).

Although no “natural” reservoir reference conditions can exist, the operational determination of reference conditions for reservoirs is the same as that for natural lakes. Reservoirs can be classified according to hydrology, morphometry, management objectives, and other factors. Age of the reservoir will be important in determining the assessment expectations of the reservoir.

Historical data are important because they provide insight to past conditions essential to knowing what may be achievable, especially for degraded or significantly altered systems.

Comparison of the historical record to present reference site data greatly expands the manager’s perspective of the system. However, care must be exercised in making these comparisons when the objectives and survey methods have changed over time.

Ecological models may be used to identify water chemistry reference conditions for reservoirs or for other significantly altered waterbodies. Most reservoirs are less than 50 years old, and there is insufficient empirical evidence to document the expected condition of basins for all regions. Where documentation is available (historical data), extrapolation and model development help qualify the reference condition and may be the best way to derive and calibrate the biocriteria.

3.2.5 Metric Determination

Metrics are evaluated for relevance to biological assessment and for response to stress. Expected measurement values vary as a function of regional species pools, regional characteristics (climate, geology, soils, land use, regional scale barriers to colonization), and local site characteristics (habitat factors, including local barriers). A regional approach involving collaboration of neighboring jurisdictions will enhance characterization of reference conditions. Cross-state comparisons can be made more easily if common methods and measurements can be established among states.

Metrics are typically calculated from data collected on single assemblages of lake biota, such as planktonic algae, zooplankton, fish, aquatic plants, and benthic invertebrates. The metrics might include counts, species identifications, ratios, and indices combining several data variables depending on the level of effort, or tier, of the survey.

3.2.6 Data Analysis

When performing bioassessment of lakes, individual metrics are assigned scores, usually a number corresponding to good, fair, or poor relative to the values of the measurements in reference conditions (Karr 1991, Karr et al. 1986). This serves to standardize the metrics on the same scale so they can be combined into an additive index. Measurement scores are summed to obtain an index score for each assemblage, such as an IBI or macroinvertebrate community score. Currently, each measurement is weighted equally in the summed index score.

Additive biological indices collapse a great deal of information into a single number. Yet they have been shown to be reliable in detecting impairment of aquatic systems (Fore et al. 1994, Fore et al. 1996, Wallace et al. 1996); they are simple to compute once criteria are established, and they are easily communicated to managers and the public (Gerritsen 1995).

Habitat component scores may give clues to the causes of impairments reflected in biological indices rated fair or poor. Habitat variables that are significantly different from reference conditions are identified as probable causes of impairment, warranting further investigation or remediation. This sort of bioassessment cannot establish cause of impairment; it can only separate probable from improbable causes of impairment. In any given bioassessment, several probable causes might be identified.

3.3 Biocriteria

Biological data are used to help set biological criteria based on management needs and defined management classes. States may draft general narrative biocriteria early in their program - even before they have designated reference sites or refined their approach to biological surveys. This does not mean that having reference sites and a refined system for conducting surveys is unimportant; it means that a biocriteria program begins with writing into law a statement of intent to protect and manage water resources predicated on an objective or benchmark, for example, “aquatic life shall be as naturally occurs.”

When the objective to restore and protect the biological integrity of the water resources has been formally mandated, then the operational meaning of the statement and the identification of the agency responsible for developing the necessary procedures and regulations can be stipulated as the state’s first steps toward the development of narrative and numeric biological criteria. The key point is that natural or minimally impaired water resource conditions become the criteria for judgement and management.

Although based on the same concept as narrative biocriteria, numeric biocriteria include discrete quantitative values that summarize the status of the biological community and describe the expected condition of this system for different designated water resource uses.

The key distinction between narrative biocriteria supported by a quantitative database and numeric biocriteria is the direct inclusion of a specific value or index in the numeric criteria. This index allows a level of specification to water resource evaluations and regulations not common to narrative criteria. To develop numeric criteria, the resident biota are sampled at minimally impaired sites to establish reference conditions. Attributes of the biota, such as species richness, presence or absence of indicator taxa, and distribution of trophic groups, help establish the normal range of the biological community as it would exist in unimpaired systems.

reservior graphic Case Study: Biological Assessment of Reservoirs by TVA

The Tennessee Valley Authority is currently using a multimetric biological assessment methodology on its reservoirs. The Tennessee River watershed drains portions of four ecoregions: Blue Ridge, Central Appalachian Ridge and Valley, Southwestern Appalachians, and Interior Plateau (Omernik 1987) (Figure 3-3). The Tennessee River begins at the confluence of the Holston and French Broad Rivers and receives drainage from the Ridge and Valley and Blue Ridge ecoregions. Downstream, the river drains a small portion of the Southwestern Appalachians and a large part of the Interior Plateau. The main stream carries water from two to four ecoregions. Therefore, dividing the main stream reservoirs by ecoregion does not contribute to a meaningful classification. Figure 3-3 illustrates that the tributary reservoirs can be easily divided by ecoregion. There are several reservoirs with watersheds entirely within the Blue Ridge and Ridge and Valley ecoregions. There is a third, and more dispersed, group of tributary reservoirs in the Interior Plateau.

Physical, chemical, and biological indicators were selected to provide information on the health or condition of habitats or ecological compartments. The open water or pelagic area was represented by physical and chemical characteristics of water (including chlorophyll) in midchannel. The shoreline or littoral area was evaluated by sampling the fish community. The bottom or benthic compartment was evaluated using two indicators: quality of surface sediments in midchannel (determined by chemical analysis of sediments) and examination of benthic macroinvertebrates from a transect across the full width of the sample area (including overbanks if present).

Three areas were selected for monitoring: the in-flow area, generally riverine in nature, the transition zone or mid-reservoir area where water velocity decreases due to increased cross-sectional area, suspended materials begin to settle, and algal productivity increases due to increase water clarity; and the forebay, the lacustrine area near the dam. Overbanks, basically the floodplain which was inundated when the dam was built, were included in transition zone and forebay areas. Four large embayments (all with drainage areas greater than 500 square miles and surface areas greater than 4500 acres) were included in the Vital Signs Monitoring program. Ecosystem interactions within an embayment are mostly controlled by physical characteristics of the embayment and by activities and characteristics within the embayment watershed, usually with little influence from the main body of the reservoir (Meinert et al. 1992).

Sampling frequencies and index periods take into account the expected temporal variation for each indicator. Physical and chemical components vary significantly in the short term so they are monitored monthly from spring to fall. Biological indicators better integrate long-term variations and are sampled once each year. Fish assemblage sampling is conducted in autumn (September-November).

Initially, benthic macroinvertebrate sampling was conducted in early spring (February-April) to avoid aquatic insect emergence. The TVA experience showed that a late winter/early spring sampling period is not acceptable for benthic macroinvertebrates because results reflected conditions which occurred the previous year. This causes results from this indicator to be out of synch with the other four indicators. A late fall/early winter collection avoids problems resulting from early spring sampling.

The TVA case study is continued in subsequent chapters.

Figure 3-3. The information provided in this graphic is too detailed to be described in this tag. Please contact EPA at OW-GENERAL@epa.gov to ask for this information in another manner.


Home ~ Preface ~ Chapter 1 ~ Chapter 2
Chapter 3 ~ Chapter 4 ~ Chapter 5 ~ Chapter 6
Chapter 7 ~ Chapter 8 ~ Chapter 9 ~ Chapter 10
Appendix A ~ Appendix B ~ Appendix C ~ Appendix D
Appendix E ~ Appendix F ~ Appendix G


Top of Page

 

 
Begin Site Footer

EPA Home | Privacy and Security Notice | Contact Us