Skip common site navigation and headers
United States Environmental Protection Agency
Monitoring and Assessing Water Quality
Begin Hierarchical Links EPA Home > Water > Wetlands, Oceans, & Watersheds > Monitoring and Assessing Water Quality > Biological Assessment > Lake and Resevoir Bioassessment and Biocriteria Technical Guidance Document > Chapter 6: Biological Assemblages End Hierarchical Links

 

Chapter 6
Biological Assemblages


The proposed biological sampling methodology is tiered, ranging from a trophic state assessment to detailed biosurveys. Many of the methods are based on those used in USEPA’s Clean Lakes Program and Environmental Monitoring and Assessment Program (EMAP) lakes component.

Lake surveys require sampling of biological assemblages and habitat in one or more field visits. Several of the proposed lake biosurvey measurements are made from transects extending from the shore to the sublittoral habitat, and several other measurements are made from one or more stations in the pelagic region of the lake (Chapter 7). The integrated sampling scheme combines all sampling activities carried out on the transects and includes mid-lake sampling sites for pelagic samples. The number of transects, the number of sampling sites, the assemblages sampled, and the frequency of sampling vary among the survey tiers.

The study of any group of organisms will yield information on the status of their environment. The objective in selecting assemblages for lake bioassessment was to find assemblages that:

  • Are unambiguously useful for biological assessment.
  • Can be sampled and interpreted in a cost-effective way.
  • Are consistent with the current mix of expertise in natural resource agencies.
  • Can be easily converted to a multimetric index of the assemblage.

The recommended assemblages are phytoplankton, sedimented diatoms, submerged and floating aquatic macrophytes, crustacean zooplankton, benthic macroinvertebrates, fish, and periphyton. The discussion of each assemblage includes some estimates on the level of effort required for sampling. These are intended as general guidelines. Actual time and effort involved will depend on the specific expertise and resources available to individual agencies.

Emergent vegetation is not included as an assemblage in this document because methods for emergent plants are under development by USEPA and other agencies as part of the development of wetlands bioassessment methods. Several other potential assemblages were not considered because there was little information on their utility as environmental indicators for lakes. They included benthic meiofauna, protozoa, and bacteria. Background and rationale for the selected assemblages are presented in Appendix D.

6.1 Primary Producers: Trophic State Assessment

Phytoplankton are the base of most lake food webs, and fish production is linked to phytoplankton primary production (Ryder et al. 1974). Excessive nutrient and organic inputs from human activities in lakes and their watersheds lead to eutrophication, characterized by increases in phytoplankton biomass, macrophyte biomass, nuisance algae blooms, loss of water clarity from increased primary production, and loss of oxygen in bottom waters. From a human perspective, eutrophication problems might include loss of aesthetic appeal, decreases in desirable gamefish, loss of accessibility due to increased macrophyte production, and increased cost of treating drinking water.

Trophic state is assessed with 4 Trophic State Indices (TSI) - chlorophyll a, Secchi depth, total nitrogen, and total phosphorus (Carlson 1977, Carlson and Simpson 1996) - and with Algal Growth Potential (AGP) (i.e., nutrient availability for algal growth). The chlorophyll TSI (Table 6-1) indicates whether algal biomass is low, medium, or high; the Secchi TSI indicates if algal growth may be limited by mineral turbidity; and the nutrient TSIs can indicate excess or limiting nutrient supply.

Table 6-1. Potential algal trophic state metrics.

Table 6-1. The information provided in this graphic is too detailed to be described in this tag. Please contact EPA at OW-GENERAL@epa.gov to ask for this information in another manner.

Level of Effort

Trophic state assessment is relatively inexpensive. Sample collection requires approximately 10 minutes on station and can be done by a single person. Filtration of chlorophyll samples requires another 10 to 15 minutes in the field. Chlorophyll, nutrients, and other water quality chemical analyses are standard and costs are well established in each region.

6.2 Submerged macrophytes

Macrophytes form an integral part of the littoral zone of many lakes, providing cover for fish and substrate for invertebrates. From a human perspective, overabundant macrophytes (or weedy conditions) can interfere with lake access by fouling equipment, interfering with recreational activities, and detracting from aesthetic appeal. A conspicuous lack of native macrophytes in habitats where they are expected to occur can result in reduced population of sport and forage fish and waterfowl (Crowder and Painter 1991). Potential macrophyte metrics are listed in Table 6-2.

Table 6-2. Potential macrophyte metrics.

Table 6-2. The information provided in this graphic is too detailed to be described in this tag. Please contact EPA at OW-GENERAL@epa.gov to ask for this information in another manner.

Level of Effort

Submerged macrophyte analysis, including an estimate of total percent cover and identification of dominant species, requires approximately 1 to 2 hours in the field for a 300- to 500-acre lake. There is no laboratory analysis.

For the same size lake, macrophyte density or biomass measurements would require 2 to 4 hours in the field to collect samples, and to sort and weigh by species. Stem counts would likely require a longer time. Again, there is no laboratory analysis.

6.3 Sedimented Diatoms

Phytoplankton cells continually grow and die, and dead cells sink to the bottom. One group of algae, the diatoms, have shells (called frustules) made of silica (glass), which are preserved when the dead cells fall to the lake bottom. The preserved diatoms provide an integrated record of the diatom assemblage in the lake. A sample of the top 1 to 2cm of lake sediment contains a representative sample of diatoms from the most recent 1 to 3 years. Sedimented diatoms can be sampled at any time and will always yield a sample representative of the most recent years. Potential sedimented diatom metrics are listed in Table 6-3.

Table 6-3. Potential sediment diatom metrics.

Table 6-3. The information provided in this graphic is too detailed to be described in this tag. Please contact EPA at OW-GENERAL@epa.gov to ask for this information in another manner.

Level of Effort

Sedimented diatoms are sampled rapidly in the field. A sample requires approximately 1 hour to prepare and 2 to 4 hours to count and identify 300 to 500 cells.

6.4 Benthic Macroinvertebrates

Benthic macroinvertebrates are long-term indicators of environmental quality; they integrate water, sediment, and habitat qualities (USEPA 1989b, USEPA 1990d). Macroinverte-brate species have sensitive life stages that respond to stress and integrate effects of both short-term and long-term environmental stressors. Classification of benthos according to their relative sensitivity to pollution and their functional feeding group level differentiates effects on ecological health in response to organic or toxic perturbations. Potential metrics are listed in Table 6-4.

Table 6-4. Potential benthic macroinvertebrates metrics.

Table 6-4. The information provided in this graphic is too detailed to be described in this tag. Please contact EPA at OW-GENERAL@epa.gov to ask for this information in another manner.

Macroinvertebrates are sampled from the predominant substrate available in the sublittoral zone. The type of sampling gear will depend on the substrate being sampled: each substrate has its own optimal sampling gear (Chapter 7).

Level of Effort

A benthic sample, consisting of several grabs, requires 2 to 4 hours in the field. Sorting, counting, and identifying 100 organisms to species requires approximately 4 to 6 hours in the laboratory.

6.5 Fish

Fish assemblages include species that represent a variety of trophic levels (omnivores, herbivores, insectivores, planktivores, piscivores), and that exhibit a range of tolerance to water quality or habitat degradation. Fish are long-lived and integrate short-term temporal environmental changes, and also integrate effects of lower trophic levels (e.g., primary producers and benthic macroinvertebrates); thus, fish assemblage structure is reflective of integrated environmental health. Of all biological components of lakes, fish probably receive the greatest public attention because of sport and commercial fishing and attendant concerns regarding fish production success and safety for human consumption.

Fish are the most difficult and time consuming of all assemblages to sample; are wide-ranging and might not reflect local conditions in large lakes; and are actively and intensively managed by stocking and angling. Each feasible gear type suitable for their sampling in lakes is highly selective (USEPA 1994a, USEPA 1994b). Unbiased sampling methods such as explosives, rotenone, and draining a lake are generally too destructive. Because of lake fish assemblage sampling method bias, the use of a combination of more than one gear type is recommended (Chapter 7). Potential fish metrics are provided in Table 6-5. Among the most promising measurements are indicators of fish health (external gross pathology) and fish tissue contamination.

Table 6-5. Potential fish metrics.

Table 6-5. The information provided in this graphic is too detailed to be described in this tag. Please contact EPA at OW-GENERAL@epa.gov to ask for this information in another manner.

Level of Effort

Fish populations are generally nonrandomly distributed and clumped in response to habitat variables; therefore, the choice of sampling methods and equipment, index period, and sampling frequency depend upon waterbody physical characteristics and specific study objectives. An understanding of the attributes and/or biases of sampling equipment and methods used in fish assemblage surveys is essential in order to draw valid conclusions from the data. The relative labor intensity of fish sampling techniques varies greatly, depending on the specific method chosen and the abundance and diversity of the catch. For example, passive techniques (e.g., trap nets, gill nets, etc.) generally require a deployment and capture cycle of many hours (e.g., overnight sets) to several days; and the processing of catches from either passive or active sampling techniques may require several hours depending on local abundances and method efficiencies.

6.6 Phytoplankton Assemblage

Phytoplankton assemblage data, consisting of taxonomic identifications and abundances (relative or absolute) can be analyzed in two ways: by determining assemblage measurements based on species structure or by performing multivariate assemblage analysis. Potential phytoplankton metrics are listed in Table 6-6.

Table 6-6. Potential phytoplankton metrics.

Table 6-6. The information provided in this graphic is too detailed to be described in this tag. Please contact EPA at OW-GENERAL@epa.gov to ask for this information in another manner.

The recommended approach is to sample the phytoplankton assemblage and to count and identify cells to order or genus. Simplified field and laboratory procedures are possible for measurements based on higher taxonomic levels such as division or order. Identification to species is considered supplemental at this time because it is not clear that the information gained represents a substantial improvement over higher levels of taxonomy.

The phytoplankton assemblage requires 4 to 10 samples during the growing season to obtain a seasonal average of the phytoplankton assemblage. The exact number will need to be determined from preliminary or existing data sets.

Level of Effort

An integrated water column sample of phytoplankton requires approximately 10 minutes to collect. Laboratory identification and counting of 300 to 500 cells requires 1 to 4 hours in the laboratory.

6.7 Zooplankton

In most lakes, zooplankton are the central trophic link between primary producers and fish. Zooplankton are ubiquitous in all lakes and are quickly and easily sampled in the field. Zooplankton species richness is reduced under chemical stresses (Baker and Christensen 1991), and abundant large Daphnia are associated with clear lakes with healthy sport fish populations (Mazumder 1994). Trophic structure measurements require knowledge of feeding of zooplankton species—trophic links and complexity measures require the most detailed knowledge. Potential zooplankton metrics are shown in Table 6-7.

Table 6-7. Potential zooplankton metrics.

Table 6-7. The information provided in this graphic is too detailed to be described in this tag. Please contact EPA at OW-GENERAL@epa.gov to ask for this information in another manner.

Zooplankton are sampled with vertical or oblique tows, using a plankton net equipped with a 7:1 reducing cone (DeBernardi 1984). The recommended approach is to sample 4 to 6 times during a growing season to obtain seasonal averages.

Level of Effort

A zooplankton sample can be collected in approximately 10 to 30 minutes in the field. Identification and counting of 100 to 200 organisms requires approximately 1 to 2 hours. Six samples in a growing season per lake thus requires six trips and 6 to 12 laboratory hours.

6.8 Periphyton

Periphyton, the algae growing on solid substrates (rock, wood, sediment, macrophytes), have a long history of use in bioassessment of streams (Patrick 1949). Diatoms are often the group of choice among periphytic algae. Ecology of periphyton is much like other algal assemblages: they respond to nutrient enrichment; they are cropped by grazers; and their species composition is affected by pH, metal concentrations, trace elements, and contaminants. In addition, periphyton are affected by the physical and chemical characteristics of their substrate. Like phytoplankton, periphyton are subject to changing water chemistry and seasonal succession. Several sampling periods may be necessary to characterize lake periphyton.

Whereas periphyton have been used successfully in streams (Bahls 1993, Patrick 1949), their application as lake indicators is relatively new. Measurements of periphytic diatoms have shown promise for bioassessment, based on investigation of undisturbed reference lakes in Montana (Gerritsen and Bowman 1994), but actual responses to disturbance or pollution are as yet unknown.

Level of Effort

Analysis of a periphyton sample requires 2 to 6 hours, similar to diatoms and phytoplankton.

Case Study: Florida Metric Selection and Index Development

Of 32 potential macroinvertebrate metrics examined, 9 were selected as candidate metrics for an invertebrate index for Florida lakes. Responsive metrics are shown in Figure 6-1. Most metrics have different values among the three lake types, with sandy-bottom lakes having the greatest macroinvertebrate number of taxa (and other related metrics), the greatest proportion of OET (Odonata, Ephemeroptera, Trichoptera) organisms, and the greatest proportions of filter feeders and surface gatherers (Fig. 6-1).

Figure 6-1. The information provided in this graphic is too detailed to be described in this tag. Please contact EPA at OW-GENERAL@epa.gov to ask for this information in another manner.

Figure 6-1. Metrics related to algal production, Florida lakes (from Florida DEP 1994). a: algal density (cells/ml) b: chlorophyll a c: chlorophyll TSI

Several metrics were correlated with each other. The Shannon index was strongly correlated with total taxa and with dominance. Graphic examination of the relationships among the metrics showed that the Shannon-total taxa relationship was not entirely linear, and the Shannon-dominance relationship had large and asymmetric variance in the middle of the range (Fig. 6-2). Because of the variance and non-linearity of the relationships, all of the candidate metrics were retained for inclusion in a potential index.

Figure 6-2. The information provided in this graphic is too detailed to be described in this tag. Please contact EPA at OW-GENERAL@epa.gov to ask for this information in another manner.

Figure 6-2. Relationship of two highly correlated attributes, Shannon diversity and percent dominance (from Gerritsen and White 1997).

Reference and test lakes also differed in water column measurements (Fig. 6-3). Test lakes as a group had higher chlorophyll concentrations and reduced Secchi transparency, and higher total phosphorus than the corresponding reference lakes, showing increased trophic state in the test lakes. Total Kjeldahl nitrogen was higher in sandy and mud-muck test lakes, and algal growth potential was increased in the mud-muck lakes.

Figure 6-3. The information provided in this graphic is too detailed to be described in this tag. Please contact EPA at OW-GENERAL@epa.gov to ask for this information in another manner.

Figure 6-3. Distribution of nutrients, secchi depth, and chlorophyll a in Florida reference and test labs.

Eight invertebrate metrics appear responsive to lake stressors, and can be used in a lake invertebrate index (number of taxa, Shannon-Wiener diversity, Hulbert index, OET taxa, percent dominance, percent filterers, percent OET, and percent gatherers). Two trophic state indicators (Secchi depth and chlorophyll a concentration) also had characteristic values under reference conditions, and are best used in conjunction with an invertebrate index to determine status of a lake.


Home ~ Preface ~ Chapter 1 ~ Chapter 2
Chapter 3 ~ Chapter 4 ~ Chapter 5 ~ Chapter 6
Chapter 7 ~ Chapter 8 ~ Chapter 9 ~ Chapter 10
Appendix A ~ Appendix B ~ Appendix C ~ Appendix D
Appendix E ~ Appendix F ~ Appendix G


Top of Page

 

 
Begin Site Footer

EPA Home | Privacy and Security Notice | Contact Us