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EPA's Region 6 Office

Serving: Arkansas, Louisiana, New Mexico, Oklahoma, Texas, and 66 Tribal Nations

Organic Laboratory Team

The Organic Laboratory Team analyzes samples of water, soils, and oils for pesticides, herbicides, polychlorinated biphenols (PCBs), and semi-volatile compounds. These samples come from a variety of places such as wells that provide drinking water to the public, waste treatment plants, chemical plants, landfills, or abandoned sites where hazardous waste has been disposed. The organic laboratory consists of an extraction laboratory, a pesticide/PCB laboratory, a volatile laboratory, and a semi-volatile laboratory.

Extraction Laboratory

In the organic extraction laboratory, the analytes of interest are extracted from the sample by adding a solvent such as methylene Chemist performing organic extraction of aqueous samples. chloride, and then reducing the extract to concentrate the analytes. It is then sent to the analytical labs (gas chromatographs or mass spectrometers) to be analyzed.


Some of the extraction processes used for extracting water samples include Separatory Funnel, Accelerated One Step,Picture of Accelerated One Step organic sample extraction apparatus. Continuous Liquid-Liquid, and Excell. The extraction is performed using these methods by allowing a solvent such as methylene chloride to drip slowly through the water sample so the hazardous compounds detach from the water and attach to the methylene chloride. The methylene chloride compounds are then collected and reduced to a small amount of extract for analysis.

Picture of chemist performing organic extraction of soils.

The process is similar with soils however, the solvent may drip through the soil or is vibrated by a probe. The vibration breaks up the soil, and the hazardous compounds detach from the soil and attach to the solvent. This extraction process is known as sonication. Another process which allows the soil to boil directly in the solvent is known as soxtherm. During the boiling action, hazardous compounds are transferred from the soil to the solvent. Again the solvent is collected and reduced to a small amount of extract for analysis.


Pesticide/PCB Laboratory (GC LAB)

Picture of chemist preparing  pesticide standardsThis laboratory performs Pesticide, PCB, and Herbicide analysis on sample extracts provided by the extraction laboratory. The concentrated solvent is injected into a gas chromatograph (GC) which separates the many possible components for identification. The GC uses a detector called an electron capture detector (ECD) that is specific for the halogen groups which are common to Chemist reviewing pesticide analytical data. many pesticides (specifically chlorine groups).


This somewhat selective detector helps to eliminate compounds from being identified as pesticides if they don’t have a halogen group. Compounds are identified by the amount of time it takes for them to travel through the GC column and reach the detector which then makes a peak on the chart for that compound. Analytes detected are confirmed on a second GC column (and or detector) that is different than the first. Only compounds identified by both columns are reported as present.


Semivolatiles Laboratory (GC/MS)

This laboratory uses Gas Chromatography/Mass spectrometry (GC/MS) to identify the Chemist performing semi-voiltalie analysissemivolatile compounds sometimes referred to as Acid/Base/Neutral. The solvent extract is taken from the extraction laboratory and injected into a GC/MS instrument.The GC separates the many possible components in the Picture of chemist  performing  maintance on GC/MSsolvent and the mass spectrometer detects these analytes as they leave the GC column. The GC produces a retention time for each component (same as in the Pesticide lab) and the MS gives a fingerprint identification. The semivolatile compounds are compounds that typically are not volatile enough to be analyzed as a volatile by purge and trap, but still volatile enough to be analyzed by GC.



Volatiles Laboratory (GC/MS)

Chemist performing volatile chemical compound analysis.This laboratory also uses GC/MS to identify the target analytes of interest. Chemist loading samples into auto sampler for volatile chemical analysis.The unique feature of this analysis is the use of the purge and trap (P&T) to extract the sample (the extraction laboratory is not typically involved with VOA samples). The purge and trap bubbles a gas (helium) through the liquid sample to force the volatile analytes out and into a special trapping material that is in the P&T. The trap concentrates the analytes and injects them into the GC/MS for analysis. This is necessary because VOA (volatitle organic analysis) compounds are gases at room tempuratures.

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