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Current Publications
Journal Articles, Books, & Book Chapters



Brown, Cheryl A. and Walter G. Nelson.  2015.  A method to identify estuarine water quality exceedances associated with ocean conditions.  Environmental Monitoring and Assessment 187:133, 14 pages.  DOI 10.1007/s10661-015-4347-3.

Ebersole, J.L., P.J. Wigington Jr., S.G. Leibowitz, R. Comeleo and J. Van Sickle.  2015.  Predicting the occurrence of cold water patches at intermittent and ephemeral tributary confluences of warm rivers.  Freshwater Science 34(1):111-124.

Ferreira, Wander R., Raphael Ligeiro, Diego R. Macedo, Robert M. Hughes, Philip R. Kaufmann, Leandro G. Oliveira and Marcos Callisto.  2015.  Is the diet of a typical shredder related to the physical habitat of headwater streams in the Brazilian Cerrado?  International Journal of Limnology 51, 10 pages.  DOI: 10.1051/limn/2015002.

Kaldy, James E., Deborah J. Shafer, A. Dale Magoun.  2015.  Duration of temperature exposure controls growth of Zostera japonica: Implications for zonation and colonization.  Journal of Experimental Marine Biology and Ecology, 464:68-74.  

Marcot, Bruce G., Peter H. Singleton and Nathan H. Schumaker.  2015.  Analysis of sensitivity and uncertainty in an individual-based model of a threatened wildlife species.  Natural Resource Modeling 28(1):37-58.

Martin-Mikle, Chelsea J., Kirsten M. de Beurs, Jason P. Julian, Paul M. Mayer.  2015.  Identifying priority sites for low impact development (LID) in a mixed-use watershed.  Landscape and Urban Planning 140:29-41.

Martins, Isabela, Barbara Sanches, Philip Robert Kaufmann, Robert M. Hughes, Gilmar Bastos Santos, Joseline Molozzi and Maacos Callisto.  2015.  Ecological Assessment of a southeastern Brazil reservoir.  Biota Neotropica 15(1):1-10.

Payton, Quinn C., Michael G. McManus, Marc H. Weber, Anthony R. Olsen and Thomas M. Kincaid.  2015.  micromap: A Package for Linked Micromaps.  Journal of Statistical Software 63(2) 16 pages.

Perakis, Steven S., Alan J. Teplay and Jana E. Compton.  2015.  Disturbance and topography shape nitrogen availability and δ15N over long-term forest succession.  Ecosystems: DOI: 10.1007/s10021-015-9847-z

Sobota, Daniel J., Jana E. Compton, Michelle L. McCrackin and Shweta Singh.  2015.  Cost of reactive nitrogen release from human activities to the environment in the United States.  Environmental Research Letters 10, 13 pages.  Doi:10.1088/1748-9326/10/2/025006.

Weber, Matthew A., Paul L. Ringold.  2015.  Priority river metrics for residents of an urbanized arid watershed.  Landscape and Urban Planning 133:37-52.

Weilhoefer, Christine I., Walter G. Nelson and Patrick Clinton.  2015.  Tidal Channel Diatom Assemblages Reflect within Wetland Environmental Conditions and Land use at Multiple Scales.  Estuaries and Coasts 38:534-545.



Boumans, Roelof J.M., Donald L. Phillips, Winona Victery, Thomas D. Fontaine.  2014.  Developing a model for effects of climate change on human health and health-environment interactions: Heat stress in Austin, Texas.  Urban Climate 8:78-99.

Brooks, J. Renee, John J. Gibson, S. Jean Birks, Marc H. Weber, Kent D. Rodecap and John L. Stoddard.  2014.  Stable isotope estimates of evaporation: inflow and water residence time for lakes across the United States as a tool for national lake water quality assessments.  Limnology and Oceanography 59(6):2150-2165.

Dabrowski, J., G. Hall, N. Lϋbcker, P.J. OBerholster, D.L. Phillips and S. Woodborne.  2014.  Piscivory does not cause pansteatitis (yellow fat disease) in Oreochromis mossambicus from an African subtropical reservoir.  Freshwater Biology 59:1484-1496.

Evans, Daniel M., Stephen H. Schoenholtz, Parker J. Wigington Jr., Stephen M. Griffith, William C. Floyd.  2014.  Spatial and temporal patterns of dissolved nitrogen and phosphorus in surface waters of a multi-land use basin.  Environmental Monitoring and Assessment 186:873-887.

Ferreira, W.R., R. Ligeiro, D.R. Macedo, R.M. Hughes, P.R. Kaufmann, L.G. Oliveira, and M. Callisto. 2014  Importance of environmental factors on the richness and  distribution of benthic macroinvertebrates in tropical headwater streams .  Freshwater Science (formerly JNABS). DOI: 10.1086/676951.

Ferreira, Wander R., Raphael Ligeiro, Diego R. Macedo, Robert M. Hughes, Philip R. Kaufmann, Leandro G. Oliveira, Marcos Callisto.  2014.  Importance of environmental factors for the richness in tropical headwater streams.  Freshwater Science 33(3):860-871.

Fordham, Damien A., Kevin T. Shoemaker, Nathan H. Schumaker, H. Resit Akçakaya, Nathan Clisby, Barry W. Brock.  2014. How interactions between animal movement and landscape processes modify local range dynamics and extinction risk.  Biology Letters 10. http://dx.doi.org/10.1098/rsbl.2014.0198.

Frazier, Melanie R., Janet O. Lamberson and Walter G. Nelson.  2014.  Intertidal habitat utilization patterns of birds in a Northeast Pacific estuary.  Wetlands Ecology and Management, DOI 10.1007/s 11273-014-9346-6.

Gray, Myles, Mark G. Johnson, Maria I. Dragila, Markus Kleber.  2014.  Water uptake in biochars: The roles of porosity and hydrophobicity.  Biomass and Bioenergy 61:196-205.

Greathouse, Effie A., Jana E. Compton, and John Van Sickle.  2014.  Linking landscape characteristics and high stream nitrogen in the Oregon coast range: red alder complicates use of nutrient criteria.  Journal of the American Water Resources Association.  DOI:10.1111/jawr.12194.Janousek, Christopher N., Folger, Christina L.  2014.  Variation in tidal wetland plant diversity and composition within and among coastal estuaries: assessing the relative importance of environmental gradients.  Journal of Vegetation Science 25(2):534-545.

Huber, Patrick R., Steven E. Greco, Nathan H. Schumaker, Joe Hobbs.  2014.  A priori assessment of reintroduction strategies for a native ungulate; using HexSim to guide release site selection.  Landscape ecology 29:689-701.

Jessup, Benjamin K., Philip R, Kaufmann, Forrest John, Lynette S. Guevara, and Seva Joseph. 2014. Bedded sediment conditions and macroinvertebrate responses in New Mexico streams: A first step in establishing sediment criteria. Journal of the American Water Resources Association (JAWRA) 1-17, DOI: 10.1111/jawr.12224.

Jiménez-Valencia, Juliana; Philip R. Kaufmann; Ana Sattamini; Riccardo Mugnai; Darcilio Fernandes Baptista. 2014. Assessing the ecological condition of streams in a southeastern Brazilian basin using a probabilistic monitoring design. Environ Monit Assess 186:4685-4695

Kaldy, James E.  2014.  Effect of temperature and nutrient manipulations on eelgrass Zostera marina L. from the Pacific Northwest, USA.  Journal of Experimental Marine Biology and Ecology 453:108-115.

Kaufmann, Philip R., Robert M. Hughes, John Van Sickle, Thomas R. Whittier, Curt W. Seeliger and Steven G. Paulsen.  2014.  Lakeshore and littoral physical habitat structure: A field survey method and its precision.  Lake and Reservoir Management 30:157-176.

Kaufmann, Philip R., David V. Peck, Steven G. Paulsen, Curt W. Seeliger, Robert M. Hughes, Thomas R. Whittier and Neil C. Kamman.  2014.  Lakeshore and littoral physical habitat structure in a national lakes assessment.  Lake and Reservoir Management 30:192-215.

Kaufmann, Philip R., Robert M. Hughes, Thomas R. Whittier, Sandra A. Bryce and Steven G. Paulsen.  2014.  Relevance of lake physical habitat indices to fish and riparian birds.  Lake and Reservoir Management 30:177-191.

Kaushal, Sujay S., Paul M. Mayer, Philippe G. Vidon, Rose M. Smith, Michael J. Pennino, Tamara A. Newcomer, Shuiwang Duan, Claire Welty, Kenneth T. Belt.  2014.  Land use and climate variability amplify carbon, nutrient, and contaminant pulses: A review with management implications.  Journal of the American Water Resources Association 50(3): 585-614.

Lafferty, Diana J.R., Jerrold L. Belant and Donald L. Phillips.  2014.  Testing the niche variation hypothesis with a measure of body condition.  Oikos 9 pages.  Doi: 10.1111/oik.01741.

Lazar, Julia G., Arthur J. Gold, Kelly Addy, Paul M. Mayer, Kenneth J. Forshay and Peter M. Groffman.  2014.  Instream large wood: denitrification hotspots with low N2O production.  Journal of the American Water Resources Association 50(3): 615-625.

Leibowitz, S.G., R.L. Comeleo, P.J. Wigington Jr., C.P. Weaver, P.E. Morefield, E.A. Sproles, J.L. Ebersole.  2014.  Hydrologic landscape classification evaluates streamflow vulnerability to climate change in Oregon, USA.  Hydrology and Earth System Sciences 18:3367-3392.

Londo, Jason P., John McKinney, Matthew Schwartz, Mike Bollman, Cynthia Sagers and Lidia Watrud. 2014.  Sub-lethal glyphosate exposure alters flowering phenology and causes transient male-sterility in Brassica spp.  BMC Plant Biology 14:70 (10 pages).

McCrackin, Michelle L., John A. Harrison, Jana E. Compton. 2014. Factors influencing export of dissolved inorganic nitrogen by major rivers:
A new, seasonal, spatially explicit, global model. Global Biogeochemical Cycles. DOI:10.1002/2013GB004723.

McCrackin, Michelle L., John A. Harrison, and Jana E. Compton. 2014. Future riverine nitrogen export to coastal regions in the United States: Prospects for improving water quality. Journal of Environmental Quality (Special Section) doi:10.2134/jeq2014.02.0081

Macedo, Diego R., Robert M. Hughes, Raphael Ligeiro, Wander R. Ferreira, Miriam A. Castro, Nara T. Junqueira, Deborah R. Oliveira, Kele R. Firmiano, Philip R. Kaufmann, Paulo S. Pompeu and Marcos Callisto.  2014.  The relative influence of catchment and site variables on fish and macroinvertebrate richness in cerrado biome streams.  Landscape Ecology. 29:1001-1016

Marias, Danielle E., Frederick C. Meinzer, David R. Woodruff, David C. Shaw, Steven L. Voelker, J. Renée  Brooks, Barbara Lachenbruch, Kristen Falk and Jennifer McKay.  2014.  Impacts of dwarf mistletoe on the physiology of host Tsuga heterophylla trees as recorded in tree-ring C and O stable isotopes.  Tree Physiology 34:595-607.

Mayer, Paul M., Kathleen A. Dwire, Judith A. Okay, and Philippe G. Vidon.  2014.  Featured Collection Introduction: Riparian Ecosystems and Buffers II.  Journal of the American Water Resources Association (JAWRA) 50(3):529-532 

Maynard, J.J., M.G. Johnson. 2014. Scale-dependency of LiDAR derived terrain attributes in quantitative soil-landscape modeling: Effects of grid resolution vs. neighborhood extent. Geoderma 230-231:29-40.

Omernik, James M., Glen E Griffith. Ecoregions of the conterminous United States: evolution of a hierarchical spatial framework.  Environmental Management (2014). 54:1249-66.

Ǿyvind A. Garmo, Brit Lisa Skjelkvǻle, Heleen A. de Wit, Luca Colombo, Chris Curtis, Jens Fölster, Andreas Hoffman, Jakub Hruška, Tore Hǿgǻsen, Dean S. Jeffries, W. Bill Keller, Pavel Krám, Vladimir Majer, Don T. Monteith, Andrew M. Paterson, Michela Rogora, Dorota Rzychon, Sandra Steingruber, John L. Stoddard, Jussi Vuorenmaa, Adam Worsztynowicz.  2014.  Trends in surface water chemistry in acidified areas in Europe and North America from 1990 to 2008.  Water, Air, and Soil Pollution 225:1880.  DOI 10.1007/s11270-014-1880-6.

Patil, Sopan D., Parker J. Wigington Jr., Scott G. Leibowitz, Eric A. Sproles, Randy L. Comeleo.  2014.  How does spatial variability of climate affect catchment stream flow predictions?  Journal of Hydrology 517:135-145.

Pfleeger, Thomas, Matthew Blakeley-Smith, E. Henry Lee, George King, Milton Plocher, David Olszyk. 2014. Effects of single and multiple applications of glyphosate or aminopyralid on simple constructed plant communities. Environmental Toxicology and Chemistry 33(10):2368-2378.

Phillips, Donald L., Richard Inger, Stuart Bearhop, Andrew L. Jackson, Jonathan W. Moore, Andrew C. Parnell, Brice X. Semmens, and Eric J. Ward.   2014.  Best practices for use of stable isotope mixing models in food-web studies.  Canadian Journal of Zoology 92:823-835.

Pokhrel, Lok R., Christian P. Andersen, Paul T. Rygiewicz, Mark G. Johnson.  2014  Preferential interaction of Na+ over K+ with carboxylate-functionalized silver nanoparticles.  Science of the Total Environment 490:11-18.

Qiao, Chunlian, Lingli Liu, Shuijin Hu, Jana E. Compton, Tata L. Greever and Quanlin Li. 2014.  How inhibiting nitrification affects nitrogen cycle and reduces environmental impacts of anthropogenic nitrogen input.  Global Change Biology.  doi: 10.1111/geb.12802. 

Reichman, Jay R., Peter D. Vize.  2014.  Separate Introns Gained within Short and Long Soluble Peridinin-Chlorophyll a-Protein Genes during Radiation of Symbiodinium (Dinophyceae) Clade A and B Lineages.  PLoS One 9(10): 15 pages.

Saffell, Brandy J., Frederick C. Meinzer, Steven L. Voelker, David C. Shaw, J. Renee Brooks, Barbara Lachenbruch, Jennifer McKay.  2014.  Tree-ring stable isotopes record the impact of a foliar fungal pathogen on CO2 assimilation and growth in Douglas-fir.  Plant, Cell & Environment  doi: 10.1111/pce.12256.

Schumaker, Nathan H., Allen Brookes, Jeffrey R. Dunk, Brian Woodbridge, Julie A. Heinrichs, Joshua J. Lawler, Carlos Carroll, David LaPlante. 2014. Mapping sources, sinks, and connectivity using a simulation model of northern spotted owls. Landscape Ecology  DOI 10.1007/s10980-014-0004-4

Sigua, G.C., J.M. Novak, D.W. Watts, K.B. Cantrell, P.D. Shumaker, A.A. Szogi, M.G. Johnson.  2014.  Carbon mineralization in two ultisols amended with different sources and particle sizes of pyrolyzed biochar.  Chemosphere 103:313-321.

Sohn, Julia A., J. Renee Brooks, Jurgen Bauhus, Martin Kohler, Thomas E. Kolb, Nathan B. McDowell.  2014.  Unthinned slow-growing ponderosa pine (Pinus ponderosa) trees contain muted isotopic signals in tree rings as compared to thinned trees.  Trees  DOI 10.1007/s00468-014-1016-z

Soto-Centeno, J. Angel, Donald L. Phillips, Allen Kurta, Keith A. Hobson.  2014.  Food resource partitioning in syntopic nectarivorous bats on Puerto Rico.  Journal of Tropical Ecology 30:359-369.

Spokas, K.A., J.M. Novak, C.A. Masiello, M.G. Johnson, E.C. Colosky, J.A. Ippolito and C. Trigo.  2014.  Physical disintegration of biochar: An overlooked process.  Environmental Science & Technology Letters 1:326-332.


Stahl, Leanne L., Blaine D. Snyder, Anthony R. Olsen, Thomas M. Kincaid, John B. Wathen, Harry B. McCarty.  2014.  Perfluorinated compounds in fish from U.S. urban rivers and the Great Lakes.  Science of the Total Environment 499:185-195.

Stoddard, John, Alan Herlihy, Steve Paulsen, Amina Pollard, R. Jan Stevenson, and Lester Yuan.  2014.  Comment on Bachmann et al. (2013): A nonrepresentative sample cannot describe the extent of cultural eutrophication of natural lakes in the United States.  Limnology and Oceanography 59(6):2226-2230.

Sumner, Richard, J. Bradley Johnson, and Bill Orme.  2013.  Development and adoption of a watershed approach to compensatory mitigation: Experiences in Colorado and California.  National Wetlands Newsletter 35(1):25-29.Voelker, Steven L., Frederick C. Meinzer, Barbara Lachenbruch, J. Renee Brooks and Richard P. Guyette.  2014.  Drivers of radial growth and carbon isotope discrimination of bur oak (Quercus macrocarpa Michx.) across continental gradients in precipitation, vapour pressure deficit and irradiance.  Plant, Cell & Environment 37:766-779.

Symanzik, Jurgen, Xiao Tian Dai, Marc H. Weber, Quinn Payton and Michael G. McManus.  2014  Linked Micromap Plots for South America – General Design Considerations and Specific Adjustments.  Colombian Journal of Statistics 37(2):451-469.

Tumburu, Laxminath, Christian P. Andersen, Paul t. Rygiewicz and Jay R. Reichman.  2014.  Phenotypic and genomic responses to titanium dioxide and cerium oxide nanoparticles in Arabidopsis germinants.  Environmental Toxicology and Chemistry.  DOI: 10.1002/etc.2756.

Voelker, Steven L., J. Renee Brooks, Frederick C. Meinzer, John Roden, Anna Pazdur, Slawomira Pawelczyk, Peter Hartsough, Keirith Snyder, Lenka Plavcová and Jiřĭ Šantrůček.  2014.  Reconstructing relative humidity from plant δ18O and δD as deuterium deviations from the global meteoric water line.  Ecological Applications 24(5):960-975.

Wilsey, Chad B., Joshua J. Lawler, David Cimprich and Nathan H. Schumaker.  2014.  Dependence of the endangered black-capped vireo on sustained cowbird management.  Conservation Biology 28(2):561-571.



Abdelnour, Alex, Robert B. McKane, Marc Stieglitz, Feifei Pan, Yiwei Cheng. 2013. Effects of harvest on carbon and nitrogen dynamics in a Pacific Northwest forest catchment. Water Resources Research, 49, 22 pages. Doi:10.1029/2012WR012994.

Allen, S.T., J.R. Brooks, R.F. Keim, B.J. Bond and J.J. McDonnell.  2013.  The role of pre-event canopy storage in throughfall and stemflow by using isotopic tracers.  Ecohydrology  DOI: 10.1002/eco.1408

Beedlow, Peter A., E. Henry Lee, David T. Tingey, Ronald Waschmann, Connie A. Burdick. 2013. The importance of seasonal temperature and moisture patterns on growth of Douglas-fir in western Oregon, USA. Agricultural and Forest Meteorology 169:174-185

Betts, Julia N., Mark G. Johnson, Paul T. Rygiewicz, George A. King, and Christian P. Andersen. 2013. Potential for metal contamination by direct sonication of nanoparticle suspensions. Environmental Toxicology and Chemistry 32(4):889-893.

Brown, Cathy, Anthony R. Olsen.  2013.  Bioregional monitoring design and occupancy estimation for two Sierra Nevadan amphibian taxa.  Freshwater Science 32(3): 675-691.

Collier, Kevin J., Anthony R. Olsen. 2013. Monitoring network-design influence on assessment of ecological condition in wadeable streams. Marine and Freshwater Research 74:146-156.

Compton, Jana, Brian Hill, Robin Dennis. 2013.  Connecting nitrogen deposition and ecosystem services. In Climate Vulnerability: Understanding and Addressing Threats to Essential Resources.  Elsevier Inc., Academic Press. P 23-33.

Dorner, Brigitte, Kendra R. Holt, Randall M. Peterman, Chris Jordan, David Larsen, Anthony R. Olsen, Omar I. Abdul-Azia.  2013.  Evaluating alternative methods for monitoring and estimating responses of salmon productivity in the North Pacific to future climatic change and other processes: A simulation study. Fisheries Research 147:10-23.

Ferraro, Steven P. 2013.Ecological periodic tables: in principle and practice. Oikos 122:1541-1553. (reprint)

Frazier, Melanie, A. Whitman Miller, Henry Lee II, Deborah A. Reusser.  2013.  Counting at low concentrations: The statistical challenges of verifying ballast water discharge standards.  Ecological Applications 23(2) 339-351.

Frazier, Melanie, A. Whitman Miller, Gregory M. Ruiz.  2013.  Linking science and policy to prevent the spread of invasive species from the ballast water discharge of ships.  Ecological Applications 23(2) 287-288.

Fritz, Ken M., Elisabeth Hagenbuch, Ellen D’Amico, Molly Reif, Parker J. Wigington, Jr., Scott G. Leibowitz, Randy L. Comeleo, Joseph L. Ebersole, and Tracie-Lynn Nadeau.  2013.  Comparing the Extend and Permanence of Headwater Streams from Two Field Surveys to Values from Hydrographic Databases and Maps.  Journal of the American water Resources Association (JAWRA) 1-16.  DOI: 10.1111/jawr.12040

Gardner, T.A., J. Ferreira, J. Barlow, A. Lees, L. Parry, I.C. Vieira, E. Berenguer, and 92 other co-authors including R.M. Hughes and P.R. Kaufmann. 2013. A social and ecological assessment of tropical land-uses at multiple scales: the Sustainable Amazon Network. Philosophical Transactions of the Royal Academic Society of London. 368:20120166.

Janousek, Christopher N., Christina L. Folger.  2013.  Inter-specific variation in salinity effects on germination in Pacific Northwest tidal wetland plants.  Aquatic Botany 111:104-111.

Kaldy, James E., Cheryl A. Brown, Christian P. Andersen. 2013. In situ 13C tracer experiments elucidate carbon translocation rates and allocation patterns in eelgrass Zostera marina. Marine Ecology Progress Series 487:27-39.

Lee II, Henry, Deborah A. Reusser, Melanie Frazier.  2013. Approaches to setting organism-based ballast water discharge standards.  Ecological Applications 23(2) 301-310.

Ligeiro, R., R.M. Hughes, P.R. Kaufmann, D.R. Macedo, K.R. Firmiano, W.R. Ferreira, D. Oliveira, A.S. Melo, and M. Callisto. 2013 (on-line 2012). Defining quantitative stream disturbance gradients and the additive role of habitat variation to explain macroinvertebrate taxa richness. Ecological Indicators 25:45–57

McCrackin, Michelle L., John A. Harrison, Jana E. Compton. 2013. A comparison of NEWS and SPARROW models to understand sources of nitrogen delivered to US coastal areas. Biogeochemistry. DOI 10.1007/s10533-012-9809-x

Novak, Jeffrey M., Keri B. Cantrell, Donald W. Watts, Warren J. Busscher and Mark G. Johnson. 2013.  Designing relevant biochars as soil amendments using lignocellulosic-based and manure-based feedstocks.  Journal of Soils and Sediments  DOI 10.1007/s11368-013-0680-8

Olszyk, David, Matthew Blakeley-Smith, Thomas Pfleeger, E. Henry Lee and Milton Plocher. 2013.  Effects of low levels of herbicides on prairie species of the Willamette Valley, Oregon.  Environmental Toxicology and Chemistry 32(11):2542-2551.

Pacella, Stephen R., Benoit Lebreton, Pierre Richard, Donald Phillips, Theodore H., DeWitt, Nathalie Niquil.  2013.  Incorporation of diet information derived from bayesian stable isotope mixing models into mass-balanced marine ecosystem models: A case study from the Marennes-Oléron Estuary, France.  Ecological Modelling 267:127-137.

Parnell, Andrew C., Donald L. Phillips, Stuart Bearhop, Brice X. Semmens, Eric J. Ward, Jonathan W. Moore, Andrew L. Jackson, Jonathan Grey, David J. Kelly and Richard Inger.  2013.  Bayesian stable isotope mixing models.  Environmetrics 24:3887-399.

Patil, Sopan D., Parker J. Wigington, Jr., Scott G. Leibowitz, and Randy L. Comeleo. 2013. Use of hydrologic landscape classification to diagnose streamflow predictability in Oregon. Journal of the American Water Resources Association 50(3):762-776.

Peck, David V., Anthony R. Olsen, Marc H. Weber, Steven G. Paulsen, Carol Peterson and Susan M. Holdsworth.  2013.  Survey design and extent estimates for the National Lakes Assessment.  Freshwater Science 32(4):1321-1245.

Reusser, Deborah A., Henry Lee II, Melanie Frazier, Gregory M. Ruiz, Paul W. Fofonoff, Mark S. Minton, A. Whitman Miller.  2013.  Per capita invasion probabilities: An empirical model to predict rates of invasion via ballast water.  Ecological Applications 23(2) 321-330.

Ringold, Paul L., James Boyd, Dixon Landers and Matt Weber.  2013.  What data should we collect? A framework for identifying indicators of ecosystem contributions to human well-being.  Frontiers in Ecology and the Environment 11(2):98-105.

Schechter, Shannon P., Timothy J. Canfield, and Paul M. Mayer. 2013. A Meta-Analysis of Phosphorous Attenuation in Best Management Practices (BMP) and Low Impact Development (LID) Practices in Urban and Agricultural Areas. EPA 600/R-13/208. Sept 2013. www.epa.gov/ada

Semmens, Brice X., Eric J. Ward, Andrew C. Parnell, Donald L. Phillips, Stuart Bearhop, Richard Inger, Andrew Jackson, Jonathan W. Moore. 2013. Statistical basis and outputs of stable isotope mixing models: Comment on Fry (2013). Marine Ecology Progress Series 490:285-289.

Shafer, Deborah J., James E. Kaldy and Jeffrey L. Gaeckle.  2013.  Science and management of the introduced seagrass Zostera japonica in North America.  Environmental Management  DOI 10.1007/s00267-013-0172-z.

Sobota, Daniel J., Jana E. Compton and John A. Harrison. 2013. Reactive nitrogen inputs to US lands and waterways: how certain are we about sources and fluxes? Frontiers in Ecology and the Environment. doi:10.1890/110216.

Stahl, Leanne L., Blaine D. Snyder, Anthony R. Olsen and Lynn S. Walters. 2013. A national probabilistic study of polybrominated diphenyl ethers in fish from US lakes and reservoirs. Environmental Monitoring and Assessment 185:10351-10364.

Van Sickle, John.  2013.  Estimating the risks of multiple, covarying stressors in the National Lakes Assessment.  Freshwater Science 32(1):204-216.

Wardrop, Denice H., Mary E. Kentula, Robert P. Brooks, M. Siobhan Fennessy, Sarah J. Chamberlain, Kirk J. Havens, Carl Hershner. 2013. Monitoring and Assessment of Wetlands: Concepts, Case Studies, and Lessons Learned. Chapter 11 in Mid-Atlantic Freshwater Wetlands: Advances in Wetlands Science, Management, Policy, and Practice; R.P. Brooks and D.H. Wardrop, editors. Springer. 381-419

Weber, Matthew A. 2013. Environmental justice challenges for ecosystem service valuation. Pages 135-148 in Building a Green Economy. Michigan State University Press.

Weilhoefer, Christine L.; Nelson, Walter G.; Clinton, Patrick and Beugli, D. M. Environmental Determinants of Emergent Macrophyte Vegetation in Pacific Northwest Estuarine Tidal Wetlands. Estuaries and Coasts. 2013. v.36 (2):377-389. 10.1007/s12237-012-9569-9



Bollman, M.A., M.J. Storm, G.A. King and L.S. Watrud.  Wetland and riparian plant communities at risk of invasion by transgenic herbicide-resistant Agrostis spp. In central Oregon. Plant Ecol. (2012) DOI 10.1007/s11258-011-0015-z.  WED-11-099

Brooks, J. R., P. J. Wigington, D. L. Phillips, R. Comeleo, and R. Coulombe.  Willamette river basin surface water isoscape (d18O and d2H): temporal changes of source water within the river. Ecosphere 3:39 (2012) (http://dx.doi.org/10.1890/ES1811-00338.00331).  WED-12-014

Christian, E., C. V. Baxter, J. L. Ebersole, and R. E. Gresswell. Incorporating spatial context into the analysis of salmonid-habitat relationships. First.Chapter 18, Church, M., P.M. Biron and A.G. Roy (ed.), Gravel-bed Rivers: Processes, Tools, Environments. John Wiley & Sons, Ltd., Indianapolis, IN, , 216-224, (2012)

Crowley, K.F., B., McNeil, G.M. Lovett, C.D. Canham, C.T. Driscoll, L.E. Rustad, E. Denny, R.A. Hallett, M.A. Arthur, J.L. Boggs, C.L. Goodale, J.S. Kahl, S.G. McNulty, S.V. Ollinger, L.H. Pardo, P.G. Schaberg, J.L. Stoddard, M.P. Weand, and K.C. Weathers. 2012, Do nutrient limitation patterns shift from nitrogen toward phosphorus with increasing nitrogen deposition across the Northeastern United States? Ecosystems 15:940-957.

Faulkner, B. R., J. R. Brooks, K. J. Forshay, and S. P. Cline. Hyporheic flow patterns in relation to large river floodplain attributes. Journal of Hydrology (2012)448–449:161–173. WED-11-158

Ferraro, S.P. and F.A. Cole.  2012.  Ecological periodic tables for benthic macrofaunal usage of estuarine habitats: Insights from a case study in Tillamook Bay, Oregon, USA.  Estuarine Coastal and Shelf Science 102-103: 70–83.

Hankin, S., C. Weilhoefer, J. Kaldy , and T. DeWitt. Sediment diatom species and community response to nitrogen addition in Oregon (USA) estuarine tidal wetlands. WETLANDS. The Society of Wetland Scientists, McLean, VA, USA, : pgs 9, (2012)

Hobbie, E.A., F.S. Sánchez, and P.T. Rygiewicz. Controls of isotopic patterns in saprotrophic and ectomycorrhizal fungi.  Soil Biology & Biochemistry (2012)48:60-68.  WED-11-168

Janousek, C.N. and C.L. Folger. 2012. Patterns of distribution and environmental correlates of macroalgal assemblages and sediment chlorophyll a in Oregon tidal wetlands. Journal of Phycology 48:1448-1457. Read the abstract

Kaldy, James. Influence of light, temperature and salinity on dissolved organic carbon exudation rates in Zostera marina L. Aquatic Biosystems ( 2012) 8:19. WED-10-002

Kaufmann, P.R., and J.M. Faustini. Simple measures of channel habitat complexity predict transient hydraulic storage in streams. 2012 Hydrobiologia: 685:69-95. WED-11-070

Macedo, D.R., R. Ligeiro, R. W.R. Ferreira, N.T. Junqueira, B.O. Sanches, D.O. Silva, C.B. Alves, R.M. Hughes, P.R. Kaufmann, P.S. Pompeu, G.B.Santos, and M. Callisto. 2012. Parâmetros biológicos e de habitats físicos para avaliação de bacias no Sudeste do Brasil. Ação Ambiental 47: 15-18

Marcot, B. G., M. G. Raphael, N. H. Schumaker, and B. Gelleher. How big and how close? Habitat patch size and spacing to conserve a threatened species. Natural Resource Modeling. Wiley InterScience, Silver Spring, MD, 25(3):34, (2012). WED-10-095

Nahlik, A.M., M.E. Kentula, M.S. Fennessy, and D.H. Landers.  Where is the consensus?  A proposed foundation for moving ecosystem service concepts into practice.  Ecological Economics (2012)77:27-35.  WED-11-157

Nahlik AM, Landers DH, Ringold PL, et al. 2012. Protecting our environmental wealth: connecting ecosystem goods and services to human well-being. National Wetlands Newsletter 34: 14-18. WED-12-002

Pan, Feifei, Robert B. McKane, Marc Stieglitz. 2012. Identification of optimal soil hydraulic functions and parameters for predicting soil moisture. Hydrological Sciences Journal: 57(4) 723-737.

Pan, Y., R.M. Hughes, A.T. Herlihy, and P.R. Kaufmann. 2012. Non-wadeable river bioassessment: spatial variation of benthic diatom assemblages in Pacific Northwest rivers, USA. Hydrobiologia 684(1):241-260. WED-12-FCO-063

Pan, Feifei, Marc Stieglitz, Robert B. McKane.  2012.  An algorithm for treating flat areas and depressions in digital elevation models using linear interpolation.  Water Resources Research 48(6)  doi:10.1029/2011WR010735.

Payne MC, Brown CA, Reusser DA, Lee H II. 2012.  Ecoregional Analysis of Nearshore Sea-Surface Temperature in the North Pacific. PLoS ONE 7(1): e30105. doi:10.1371/journal.pone.0030105. http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0030105

Pfleeger, T., M. Blakeley-Smith, G. King, E.H. Lee, M. Plocher, and D. Olszyk.  The effects of glyphosate and aminopyralid on a multi-species plant field trial.  Ecotoxicology.  (2012) DOI 10.1007/s10646-012-0912-5).  Wed-11-178

Phillips, D.L . Converting isotope values to diet composition: the use of mixing models. Journal of Mammalogy 93(2): 342-352 (2012).  WED 11-074

Phillips DL, "The value of our public trees" The City newsletter, Corvallis OR, Winter 2011-2012, Volume 24, Number 8, page 5. (WED-11-143)

Phillips DL, Burdick C, Merja B, Brown N "Assessment of Ecosystem Services Provided by Urban Trees: Public Lands Within the Urban Growth Boundary of Corvallis, Oregon - Technical Report"  (WED-12-007

Vaslet A, Phillips DL, France C, Feller, IC, Baldwin CC (2012).  The relative importance of mangroves and seagrass beds as feeding habitats for resident and transient fishes from Florida and Belize: evidence from dietary and stable isotope analyses.  Journal of Experimental Marine Biology and Ecology 434-435: 81-93.

Porter, Ellen M. Porter, William D. Bowman, Christopher M. Clark, Jana E. Compton, Linda H. Pardo, Jenny L. Soong. Interactive effects of anthropogenic nitrogen enrichment and climate change on terrestrial and aquatic biodiversity. Biogeochemistry DOI 10.1007/s10533-012-9803-3 (published online: 20 October 2012)

Rashleigh, Brenda, Denis White, Joe L. Ebersole, Craig Barber, George Boxall and Allen Brookes.  2012.  Forecasting fish communities in river networks.  Korean Journal of Limnology 45(2):150-157.

SanClements, M. D., G. P. Oelsner, D. M. McKnight, J. L. Stoddard, and S. Nelson. New insights into the source of decadal increases of dissolved organic matter in acid-sensitive lakes of the Northeastern U.S. ENVIRONMENTAL SCIENCE AND TECHNOLOGY. John Wiley & Sons, Ltd., Indianapolis, IN, 46:3212-3219, (2012). WED-12-064

Templer, P. H., M. C. Mack, F. S. Chapin III, L. Christenson, J. E. Compton, H. Crook, W. Currie, C. Curtis, B. Dail, C. D'Antonio, B. A. Emmett, H. Epstein, C. Goodale, P. Gundersen, S. E. Hobbie, K. Holland, D. U. Hooper, B. Hungate, I. Kappel-Schmidt, S. Lamontagne, K. Nadelhoffer, C. W. Osenberg, S. Perakis, P. Schleppi, J. Schimel, M. Sommerkorn, J. Spoelstra, A. Tietema, W. W. Wessel, and D. R. Zak. Sinks for nitrogen inputs in terrestrial ecosystems: A meta-analysis of 15N tracer field studies. ECOLOGY. Ecological Society of America, Ithaca, NY, 93(8):1816-1829, (2012).

Torgersen, C., J. Ebersole, and D. Keenan. Primer for identifying cold-water refuges to protect and restore thermal diversity in riverine landscapes - EPA 910-C-12-001. U.S. Environmental Protection Agency, Washington, DC, EPA/600/R-12/038, 2012. ORD-000013

Volkenborn, N., L. Polerecky, D.S. Wethey, T.H. DeWitt, S.A. Woodin.  Hydraulic activities by ghost shrimp Neotrypaea californiensis induce oxic-anoxic oscillations in sediments.  Marine Ecology Progress Series (2012)455:141-156.  doi: 10.3354/meps09645.  WED-11-166

Watrud, Lidia S., Jay R. Reichman, Michael A. Bollman, Bonnie M. Smith, E. Henry Lee, Julie D. Jastrow, Michael D. Casler, Harold P. Collins, Steen Fransen, Robert B. Mitchell, Vance N. Owens, Brent Bean. William L. Rooney, Donald D. Tyler, George A. King. Chemistry and microbial functional diversity differences in biofuel crop and grassland soils in multiple geographies. 2012. BioEnergy Research 5(4), 19 pages. DOI 10.1007/s12155-012-9279-y.

Weber, M., and P. Ringold.  Ecosystems and People: Qualitative Insights.  EHS Bulletin (2012)3:2-8. ORD-000013

Weber, M., P. Mozumder, and R.P. Berrens. 2012. Accounting for Unobserved Time-Varying Quality in Recreation Demand: An Application to a Sonoran Desert Wilderness. Water Resources Research 48(5): W05515.

Wigington, Parker J., Jr., Scott G. Leibowitz, Randy L. Comeleo, and Joseph L. Ebersole, 2012. Oregon Hydrologic Landscapes: A Classification Framework. Journal of the American water Resources Association (JAWRA) 49(1):163-182.

Young, David, Patrick Clinton, David Specht, T. Chris Mochon Colura and Henry Lee II. 2012. Determining bathymetric distributions of the eelgrass Zostera marina L. in three turbid estuaries on the eastern North Pacific coast. Botanica Marina 55:229-240


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